In a world with acidic oceans, shells and bones made of calcium carbonate or calcium phosphate won't work--they just dissolve. As far as shells or structural bones go, that's not a big deal--there are plenty of other substances that can be used to build hard structures, and which could still be synthesized, like chitin or keratin. However, one theory for why living bones evolved in vertebrates is that early bones served as mineral reservoirs.
If precipitating calcium and magnesium salts is more difficult due to lower pH, what else could organisms use as internal mineral storage systems for calcium and phosphate? If they can also be used structurally, like Earthling bones, that's a bonus, but not required.
(Note that, per The Evolution of Bone, another theory about the reason for vertebrate bone is simply that calcium phosphate, the form of hydroxyapatite, is considerably less soluble than calcite in "acidic extracellular conditions"; however, "acidic conditions" in that context means "as low as 6.5"--not, e.g., 4 or 3. If, however, calcium phosphate does happen to be stable at such low pH values, references indicating such would constitute an acceptable answer.)