I don't know how small you can make the universe in your story without violating any major scientific laws.
I suggest that the universe has to have a radius at least millions of times (possibly many times that) the farthest distance that humans can travel for humans to not discover any spherical shell with lights on it to represent stars and galaxies.
I would suggest that your universe might have to be thousands or tens of thousands of light years in diameter at the present, and your god or gods might have to be prepared to enlarge the other shell and move it much farther out in the future, and replace images of stars, etc. on that shell with real physical stars, etc. at the proper distances. And quite probably be prepared to do it multiple times, as he, she, or they might have done multiple times in the past.
According to the current scientific understanding of the universe based on observation and the laws of physics, the observable universe has a radius of about 46 billion (46,000,000,000) light years (14 billion parsecs) and thus a diameter of about 96 billion (96,000,000,000) light years (28 billion parsecs).
Because of the expansion of space between galaxies, the light from more distant objects can never reach Earth and be seen by Earthlings because space between more distant objects and Earth is expanding faster than the speed of light.
Because we cannot observe space beyond the edge of the observable universe, it is unknown whether the size of the Universe in its totality is finite or infinite.3[52][53] Estimates for the total size of the universe, if finite, reach as high as {\displaystyle 10^{10^{10^{122}}}} 10^{10^{10^{122}}} megaparsecs, implied by one resolution of the No-Boundary Proposal.[54][b]
https://en.wikipedia.org/wiki/Universe#Size_and_regions1
A megaparsec is one million parsecs, or 3,261,563.777 light years. And there seem to be at least 122 zeros in that number. Thus it is possible for the universe, even if finite, to have gazillions of times the volume of the observable universe.
Thus the problem of making the actually universe in your story much smaller than the universe of scientific research while not breaking any of the know laws of physics becomes very complex.
And it seems to me that the main problem with trying to make the universe the size of, for example, the solar system out to a few times the orbit of Neptune, with a spherical shell around it containing images of allegedly more distant objects, is trigonometry, a branch of geometry, and its implications for parallaxes.
Everyone has experiences with parallax. Hold out your hand at arms' length and hold up a finger so that it lines up with an object in the background looking at it with both eyes. If you close your right eye your finger will appear to jump to the right of the background object, and if you close your left eye the finger will appear to jump to the left of the background object.
And if you line up a tree and a telephone pole, for example, and then take a step to the right, the nearer one will seem to move to the left of the farther one.
As a child riding in cars at night, I often noticed the moon seeming to follow the car, disappearing behind buildings or trees and then reappearing from behind them at the same angle relative to the car as before. And that is because the Moon was usually millions of times as far away as the nearer buildings and trees and so the parallax of the buildings and trees was millions of times greater.
And the same phenomenon can see with clouds and trees, buildings, etc. when riding in a car in the daytime. The clouds are thousands of times closer than the moon, but many times farther away than nearby trees and buildings, which thus have many times greater parallaxes than the clouds.
Modern astronomers have developed techniques to measure incredibly tiny angles, probably down to about a trillionth of a full circle at the present, and will develop improved techniques to measure ever smaller angles in the future, which means they can measure ever smaller parallaxes of ever more distant objects.
I discuss stellar parallaxes in other answers to other questions.
Here, for example:
Can my spaceship figure out its position using Cepheid Variables?2
And here:
How can I know where to point my spaceship?3
So it seems to me that you will probably have to make stars which have measured parallaxes and distances of tens, hundreds, or thousands of light years from Earth really at those distances, and thus put the spherical shell, decorated with shining lights impersonating more distant stars, at an even greater distance from Earth.
And it is quite possible that results from the Gaia satellite mean that your god or gods has already had to move the spherical shell out to a distance of tens of thousands of light years.
As I remember, the distance to the Pleiades Star Cluster is very important for astronomers because it contains the nearest examples of some classifications of stars that are used as "standard candles", their apparent brightness as seen in different star clusters, etc. as compared to their calculated absolute luminosity enabling the distances of clusters containing them to be calculated.
And about 25 years ago the parallaxes of the stars in the Pleiades Star Cluster as measured by the Hipparchos satellite were controversial because they were different from those obtained by less direct means and suggested that using the Pleiades stars as "standard candles' would have to be re calibrated.
At the present time various studies and the preliminary results from Gaia suggest that the Hipparchos distance is an error.
It seems to me that you could use various controversies about the distances of various astronomical bodies to suggest that there has been some sort of foul up in impersonating a vast universe, thus implying that the universe could be much smaller than it looks.
And possibly characters in your story wonder when results from the Gaia satellite (or possibly some future successor of it) will be announced, and some may speculate that the delay is due to the observations proving that the more distant stars are lights on a spherical shell and the astronomical community is covering them up.
Since astronomers can measure parallaxes out to distances many millions of times at least the length of the baseline they use, and since it would be possible to increase the length of the baseline with observations in outer space, you might have your god or gods create an invisible but impenetrable force field around Earth, the entire solar system, or the nearby stars, and then create stars in 3D space out to a distance of millions of times at least the diameter of that force field, with the spherical shell with lights to impersonate stars and galaxies being beyond those stars in 3D space.
Then humans may discover the invisible force field when space probes or star ships crash into it and explode, and learn the truth about the universe.