As a 'frame challenge', this question seems to me to fall into the category of 'What is the sound of one hand clapping?". No matter how much thought, concentration, or focus is put into the answer, the answer just does not take any substance.
The question is very premature. Without understanding how this society preserves and communicates abstract ideas, learning, and scientific illustration, it is impossible to give any notion of how they would design an interface between the complex operation of a spaceship and the operator. How does this society preserve a representation of reality in their mind?
A species that has always been blind, and that has never had any contact with any species that HAS sight or visual experience, or that has never had any evolutionary experience with visualization, would also have no printed form of communication, no drawings, no concept of perspective, no system of scientific or mathematical representation or symbolism in any form that even approaches our complexity.
Most attempts at an answer would, I suspect, fall in to the category of 'anthropomorphism' -
noun The conception of animals, plants, or nature in general, by
analogy with man: commonly implying an unscientific use of such
analogy.
But the category of 'animals, plants, or nature' also includes 'alien sentient species'.
Most answers involve a translation or projection of our 'seeing' or 'visualizing' world into the world of the blind, allowing the blind to make 'adaptations' to understand or interpret our visualized 'seeing' construction of reality. But in this civilization there would be no 'seeing world' to translate. They would not, could not, even in the remotest sense, have any concept of the world as we understand it. None of the visual constructs that we use to represent our world would even be contemplatable by them. Their minds would be totally different, their symbolism for thinking and abstract reasoning totally alien. There would be no ability to 'visualize' anything.
Their minds would be totally different from ours, and operate in a totally different manner, with totally different structures. There would be no evolutionary similarity between the minds of this species and our mind. Nothing in the history of evolution of this species has any instance of 'visual perception', that would necessitate any brain area or structure that would lead to any form of the mind being able to 'visualize' the world. The entire concept of 'visualization' and 'visual recreation of reality' would be non-existent in the mind. And there would be no mind structures that evolved to even simulate it.
For instance, without sight, there is no mathematical symbolism. No representation of numbers, equations, mathematical concepts such as the 'integral' sign. Trying to envision how this society would operate in any engineering/scientific manner is pure conjecture, it is so beyond anything humans can even conceive of.
Even such a concept as a 'straight line' as we form it would be, in a non-visual species, not even remotely close to how we 'visualize' it. In fact, it would not even be 'visualized' in this species. The visual area of our mind has cells specifically purposed to detect and record instances of 'straight lines' in the visual field and incorporate them into the general zeitgeist of our thoughts and perceptions. When we see a straight line in the visual field, these cells are triggered and pass the event up the chain of processing. These cells are primitive and pre-historic, pre-human in fact. They are so ingrained and integrated in our information processing and thinking, at such a basic low-level neurological level, they form the basis of our interpretation and understanding of our written language and of mathematics. Any species that has never had, in their evolution, any experience with visualizing straight lines would not have these structures, these cells, and this concept. Yes, it is true we can impart in the non-seeing person our neurotypical concept of a 'straight line', but that is only because as a visual species we HAVE developed this concept of a 'straight line', even in the blind. If there were never a way to visualize a straight line in the first place to this species, there could be no method by which this visualization could be imparted to the non-seeing. That is, we can communicate to the non-seeing the concept of a straight line ONLY because, as a visual species, we have formed the concept, and we have formed the mind structures to handle such a concept. Even the blind are born with the brain structures to encompass the concept. This species could not incorporate or integrate the 'straight line' experience and concept into their thinking the way we do.
Before any answer to 'how could this species interface with a spaceship' can be answered, therefore, one would have to know exactly how this species represents reality in their mind. Otherwise, any answer is just conjecture - projecting how we, as a seeing visual species, perceive and think about the world, onto this species whose brain structure, thinking, conceptualization, and symbolic representation would be completely unrelated to anything human.