Stars...either a constellation that 'rises and sets' just like the sun would, or a single startstar that is nearby but still quite a ways away. Remember our sun drowns out much of the star scape to us, a rogue planet would have a very bright star sky. The passage of the milky way across the sky could be one usable example.
Life spans. This gets into the 'foot' being the kings foot for a unit of measure. A ruler's lifetime could be referred to as a unit of measure. Of course this means the unit of measure is inexact (so was 'foot'), but it is usable.
Moons. If they are available, a moons cycle is a great time tracker.
Arbitrary. 1 second is a relatively abstract concept (same as '1 meter'), as we've set that this is what a second is and we're using it (our second finds it's roots in early Sumerian culture where they divided things in to 6 sets of gods (one male one female) * 5 (number of fingers or number of man) = 625 = 60 seconds. Same root as 360 degrees and 12 * 2 hours in a day.
I guess the question of 'what does a civilization measure with time' becomes necessary to ask. Is time on a timeless planet really necessary? Is time nothing but arbitrary? If it's a 'slow' species (sloth?) it's possible the arbitrary unit they come up with is significantly longer for a second than a much more hyper race.